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OK, I found a path that could give the scenario you have.
If the maintenance relay is stuck in the closed position, or it is a relay that does not have a diode, it can back feed power to the 30 terminal on the lighting relay through the 87a terminal which in turn back feed power to the 30 amp and so on. In other words it can give the illusion of power on the 30 amp circuit with the key on. When the bike starts the lighting relay flips from 87a to 87 and looses the back feed. There may indeed be no power on that 30 amp circuit. It would mean two failures (30 amp circuit and maintenance relay but it is possible as both of those items have failed before).
Pull the maintenance relay and then double check that 30 amp fuse again and then also check the 40 amp. Do a continuity test on the fuse to make sure they are working. Make sure you have power to ground on both sides of the fuses with them installed. Key on or off should not make a difference with the maintenance relay pulled as you have removed the potential back feed. Alternately, if you pull the maintenance relay, do you still have power at the 30 terminal on the lighting relay with the key on. If you don't then that is your problem, along with some blown fuses.
Only scenario I can see.
yes.And both sides of the 30 amp were dead to ground. ?